Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKYSAIPTPCYALESERLEKNAKILEIVRQQSGAKVLLALKGYAFWREFGILRQKLNGCCASGLYEAKLAFEEFGGRESHKEICVYSPAFKEAEMSAILPLATSIIFNSFHQYATYKDRILDKNKQLENLGLSPIKMGLRINPLYSEVTPAIYNPCSKMSRLGITPSGFEKGVKEHGLEGVSGLHFH-----THCEQNADALCRTLEHVERHFKPYLENMAWVNFGGGHHITRSDYDVNL------LIQTIKDFKERYHNTEVILEPGEAIGWQCGFLIASVIDI-VQNDQEIAILDASFSAHMPDCLEMPYRPSILKVSVENDEEIIEVEKGENQGAFSYFLGGPTCLAGDFMGSFSFETP-LKRGDKIVFQDMLHYTIVKNNSFNGVPLPSLAKIDSQGFKILKSFSYEDYKNRN |
| 2YXX Chain:A ((13-366)) | --------TPTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREE--GFGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVRIVNVDSFEEMEIWRE-----------LNPEGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLEDLDSFMERFRSMNIRGLHVHIGSQITRVEPFVEAFSKVVRASERY------GFEEINIGGGWGINYSGEELDLSSYREKVVPDLKRFKR------VIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYH-RIFVLGKQGKEMRADVV-------------GPLCESGDVI-AYDRELPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YXX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -149281 for 2822 contacts (-52.9/contact) +
2D Compatibility (PS) -36235 + (NN) -7676 + (LL) 2244
1D Compatibility (HY) -14800 + (ID) 3750
Total energy: -209498.0 ( -74.24 by residue)
QMean score : 0.374
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