Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKFLFKQKFCESLPKSFSKTLLALSLGLILLGVFIPFPKVPKHQSVPLALHFTEHYARFIPTILSVAIPLIQRDAVGLFQVANASIATTFLTHATKRALNHVTINDQRLGERPYGGNFNMPSGHSSMVGLAVAFLMRRYSVK-----------------------KY---LWLLPLIPLTMLARIYLDMHTIGAVLAGLGTGMLCVGLFTSPKNLN |
1UP8 Chain:A ((479-576)) | --------------------------------------------------------------------------------------------------------------------FHPSYGSGHAVVAGACVTILKAFFDSGIEIDQVFEVDKDEDKLVKSSFKGTLTVAGELNKLADNIAIGRNMAGVHYFSDQFESLLLGEQVAIGILEEQSLT |
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General information:
TITO was launched using:
| RESULT:
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Template: 1UP8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -50871 for 446 contacts (-114.1/contact) +
2D Compatibility (PS) -7571 + (NN) -4162 + (LL) 9232
1D Compatibility (HY) 400 + (ID) 600
Total energy: -53572.0 ( -120.12 by residue)
QMean score : 0.152
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