Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFVRNVVLFILTAIFLAFMLLVSYCMPHYSVAVISGVEVKRMNENENTPNNKEVKTLARDVYFVQTYDPKDQKSVTVYRNEDTRFGFPFYFKFNSADISALAQSLVNQQVEVQYYGWRINLFNMFPNVIFLKPLKESDEMSKPVFSWILYALLLVGFFISARSVCTLFKGKAH
3LYV Chain:A ((29-55))
--------------------------------------------------------------DFFIYTDSED-GATNILYRREDGNLGLIEAKLE--------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3LYV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6747 for 111 contacts (-60.8/contact) +
2D Compatibility (PS) -3077 + (NN) -4527 + (LL) 12856
1D Compatibility (HY) -1600 + (ID) 350
Total energy: -3445.0 ( -31.04 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_3LYV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LYV-query.scw
PDB file :
Tito_Scwrl_3LYV.pdb
: