Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIKQILTILTPFFVATLLYFLGAPDGLNPNAWLYFCIFMGMIIGLILEPVPSGLIALSALVPCIALKIGASSEVASANKAISWGLSGYANKTVWLVFVAFILGLGYEKSLLGKRIALLLIRFLGQTPLGLGYAIGLSELCLAPFIPSNSARSGGILYPIVSSIPPLMGSTPSNNPDKIGAYLMWVALASTCITSSMFLTALAPNPLAMEIATKMGVNEISWFSWFLAFLPCGVVLILLVPLLAYKTCKPTLKGSKEVSLWAKKELESMGRFSLKEILMLSLTLLALLGWIFGKSLGLHASATALIVMVLMAFCKIVSYEDIIK-NKSAFNIFLLLGSLLTMAGGLKNVGFLNFIGN--AAQNFLEHAHLDPLIAVLFIVALFYLSHYFFASITAHVSALFALFVGIGSHIQGVNLQELSLFLMLSLGIMGILTPYGTGPSTIYYGSGYIQSKDFWKWGFIFGFLYLIVFLSVCAPWVKFIAYRWL |
1JPA Chain:A ((109-172)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRNPNSLKA----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JPA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -21230 for 294 contacts (-72.2/contact) +
2D Compatibility (PS) -6183 + (NN) 304 + (LL) 23748
1D Compatibility (HY) -7200 + (ID) 900
Total energy: -11461.0 ( -38.98 by residue)
QMean score : 0.110
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