Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEFYKRVLKLHHFRNLGKNSPTK----LLLNSSFDEKHGGLVVLVGENNVGKSNVLEALKIFNDADIKLCSEEDYFKDHEKDTLLSLEE
4KSD Chain:A ((1039-1084))
------------------NYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQL
General information:
TITO was launched using:
RESULT:
Template:
4KSD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1799 for 175 contacts (10.3/contact) +
2D Compatibility (PS) -4598 + (NN) -1592 + (LL) 1616
1D Compatibility (HY) -2800 + (ID) 850
Total energy: -6425.0 ( -36.71 by residue)
QMean score : 0.299
(partial model without unconserved sides chains):
PDB file :
Tito_4KSD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KSD-query.scw
PDB file :
Tito_Scwrl_4KSD.pdb
: