Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIIPARLKSSRFENKMLEDIFGLPMVVRCAKNA--NLVDECVVACDDESIMKACQKFHIKAVLTSKHHNSGTERCLEAAQILGLKNDERVLNLQGDEPFLEKKVILAL---LEATQNAPFMATCAKVIDEEQAKSPNLVKVVLDSQNNALYFSRSLIPFLRD-FDAKRQTPLLG----HIGIYGFHNKEILEELCALKPCVLEDTEKLEQLRALYYQKKILVKIVQSE-SMGIDTKEDLQNALKIFSPNLLKR
3TQD Chain:A ((12-256))
-VIIPARFD---LPGKALVDIAGKPMIQHVYESAIKSGAEEVVIATDDKRIRQVAEDFGAVVCMTSSDHQSGTERIAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHD--KVASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVG-FLEEYLSWDACPAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRAYF-------
General information:
TITO was launched using:
RESULT:
Template:
3TQD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148250 for 1779 contacts (-83.3/contact) +
2D Compatibility (PS) -25350 + (NN) -12816 + (LL) 688
1D Compatibility (HY) -13600 + (ID) 4450
Total energy: -203778.0 ( -114.55 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_3TQD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TQD-query.scw
PDB file :
Tito_Scwrl_3TQD.pdb
: