Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD-IRNYDLVMVSDKN-----ALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGSN------VIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLTHLARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGYRFCYPKPACEE
1YS6 Chain:A ((22-228))
--------------SLERGLRLSGF--EVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSAR--VDDRVAGLEAGADDYLVKPF-VLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ------
General information:
TITO was launched using:
RESULT:
Template:
1YS6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70394 for 1464 contacts (-48.1/contact) +
2D Compatibility (PS) -21037 + (NN) -11336 + (LL) 1808
1D Compatibility (HY) -14800 + (ID) 3050
Total energy: -118809.0 ( -81.15 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_1YS6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YS6-query.scw
PDB file :
Tito_Scwrl_1YS6.pdb
: