Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYKVADIFCGAGGLSYGFSTHPYFELIWANDIDKDAILSYQANHKETQTILCDIAQLHCHNLPRVPIDILLGGPPCQSYSTLGKRK--MDEKANLFKEYLRILDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALDYGVPQVRERVILVGALKSFK-QKFYFPKPIKTHFSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVRNSKELSEHSSPKNNEKLIKIMQTLKDGQSKDDLPESLRPKSGYINTYAKMWWEKPAPTITRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSANAKRLQIGNAVPPLLSAALAHAVFDFLRGKNV |
4MHT Chain:A ((13-306)) | --RFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEKPE--GDITQVNEKTIP--DHDILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLL-----------------LPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGERIY--STRGIAITLSAYGGGIFAK-----TGGYLVNGKTRKLHP--------RECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSLNFKPY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MHT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -85089 for 2354 contacts (-36.1/contact) +
2D Compatibility (PS) -30617 + (NN) -7668 + (LL) 1568
1D Compatibility (HY) -14000 + (ID) 4650
Total energy: -140456.0 ( -59.67 by residue)
QMean score : 0.388
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