Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNGLEEK-GYKAAVIKFDAASESDFVEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIENNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKDELKADYVKNIPLNRLGSAKEVAEAVAFLLSDHSSYITGETLKVNGGLYM
2PNF Chain:A ((3-248))IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTS-GERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLSEEIKQKYKEQIPLGRFGSPEEVANVVLFLCSELASYITGEVIHVNGGMF-


General information:
TITO was launched using:
RESULT:

Template: 2PNF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		3D Compatibility (PKB) -89773 for 2122 contacts (-42.3/contact) +
2D Compatibility (PS) -26358 + (NN) -4322 + (LL) 128
1D Compatibility (HY) -22800 + (ID) 5500
Total energy: -148625.0 ( -70.04 by residue)
QMean score : 0.581

(partial model without unconserved sides chains):
PDB file : Tito_2PNF.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2PNF-query.scw
PDB file : Tito_Scwrl_2PNF.pdb: