Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDILKAEHLNKQIKKTKIVSDVSLEVKSGEVVGLLGPNGAGKTTTFYMICGLLEPSGGSVYLNDVDLAKYPLHKRSNLGIGYLPQESSIFKELSVEENLALAGESTFKNSKESEEKMESLLDAF-NIQAIRERKGMSLSGGERRRVEIARALMKNPKFVLLDEPFAGVDPIAVIDIQRIIESLIGLNIGVLITDHNVRETLSVCHRAYVIKSGTLLASGNANEIYENALVRKYYLGENFKV
1JI0 Chain:A ((6-238))
--VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLM-MGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMVRKAYLGVA---
General information:
TITO was launched using:
RESULT:
Template:
1JI0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152062 for 1910 contacts (-79.6/contact) +
2D Compatibility (PS) -25120 + (NN) -7511 + (LL) 464
1D Compatibility (HY) -19200 + (ID) 3900
Total energy: -207329.0 ( -108.55 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_1JI0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JI0-query.scw
PDB file :
Tito_Scwrl_1JI0.pdb
: