Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKFAYSEPCLDEEDKKAVLEVLNSKQLTQ-GKYSLLFEEALCEFLGVKHALAFNSATSALLTLYRNFSDFNADRNEIITTPISFVATANMLLESGYTPVFAEVKNDG---NIDELALEKLITKKTKAIVSVDYAGKSVEIESIQRLCKKYSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTAEGGAVVTNNSELYEKMKLFRSHGMLKKDFFEGEVKSVGYNFRLNEIQSALGLSQLKKAPLLRQKREEVALIYDE-IFKDNPYFTPLHPLLKHQSSNHLYPILMHQKFFTCKKLILESLHKLGILVQVHYKPIYQYQLYQQLFNTAPLKSAEDFYSAEISLPCHANLDLESVQNIAHGVLKTFEGFNRMGFI |
| 3DR4 Chain:A ((28-382)) | ----SVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGD--EVIVPSLTYIASANSVTYCGATPVL--VDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPI--VGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHL-ATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVLV-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DR4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -167027 for 3134 contacts (-53.3/contact) +
2D Compatibility (PS) -37953 + (NN) -18999 + (LL) 1536
1D Compatibility (HY) -21600 + (ID) 5500
Total energy: -249543.0 ( -79.62 by residue)
QMean score : 0.505
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