Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRSSVFSFLVAFLLVVGCSHKMDNKTVAGDVSTKAVQTAPVTTEPAPEKEEPKQEPAPVVEEKPAIESGTIIASIYFDFDKYEIKESDQETLDEIVQKAKEN-HMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALVIKGVEKDMIKTISFGESKPKCVQKTRECYRENRRVDVKLVK
4G4V Chain:A ((11-112))
---------------------------------------------------------------------------VHFDYDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDERGTREYNMALGERRAKAVQNYLITSGVNPQQLEAVSYGKEAPVNPGHDESAWKENRRVEINYE-
General information:
TITO was launched using:
RESULT:
Template:
4G4V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8026 for 738 contacts (-10.9/contact) +
2D Compatibility (PS) -10696 + (NN) -3368 + (LL) 5308
1D Compatibility (HY) -2000 + (ID) 1750
Total energy: -20532.0 ( -27.82 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_4G4V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G4V-query.scw
PDB file :
Tito_Scwrl_4G4V.pdb
: