Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVFKRLEKLFSKIQNDKVYGVEHGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLLHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVG-KVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVNLDAQELMDIK
4QVI Chain:A ((6-228))
------KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTLGPSVRINPHS-----
General information:
TITO was launched using:
RESULT:
Template:
4QVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110478 for 1756 contacts (-62.9/contact) +
2D Compatibility (PS) -24252 + (NN) -11278 + (LL) 1420
1D Compatibility (HY) -17600 + (ID) 5450
Total energy: -167638.0 ( -95.47 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_4QVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QVI-query.scw
PDB file :
Tito_Scwrl_4QVI.pdb
: