Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEDYAISLEEVNFNDFIVVDVRELDEYEELHLPNATLISVND-QEKLADFLSQHKDQKVLLHCR--AGRRALDAAKSMHELGYTPYYLEGNVYDFEKYGFRMVYDDTSLSDKKN
3NHV Chain:A ((20-113))
-IADLSIDIKK-GYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLS--KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVEGTLGAKADLFW
General information:
TITO was launched using:
RESULT:
Template:
3NHV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47273 for 655 contacts (-72.2/contact) +
2D Compatibility (PS) -10170 + (NN) -3607 + (LL) 564
1D Compatibility (HY) -5600 + (ID) 1450
Total energy: -67536.0 ( -103.11 by residue)
QMean score : 0.634
(partial model without unconserved sides chains):
PDB file :
Tito_3NHV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NHV-query.scw
PDB file :
Tito_Scwrl_3NHV.pdb
: