Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFGVFGNPIKHSKSPLIHNACFLTFQKELGFLGHYHPILLPLESRIKNEFLHLGLSGANVTLPFKERAFQICDKIKGIALECASVNTLVLENDELVGYNTDALGFYLSLKHQNYQNDQNALILGAGGSAKALACGLQKQGLKVSVLNRSARGLDFFQRLGCDCFMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKESKLAYDLAYGFLTPFLSLAKELKIPFQDGKDMLIYQASLSFEKFSDSQIPYSKAFEVMRSVF
4FOO Chain:A ((1-263))
MKLKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVCDKIKGIALECGAVNTLVLENDELVGYNTDALGFYLSLK--NYQN---ALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGFLTPFLSLAKELKTPFQDGKDMLIYKAALSFEKFSASQIPYSKAFEVMRSVF
General information:
TITO was launched using:
RESULT:
Template:
4FOO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -202190 for 2317 contacts (-87.3/contact) +
2D Compatibility (PS) -27572 + (NN) -6580 + (LL) 128
1D Compatibility (HY) -40400 + (ID) 12300
Total energy: -288914.0 ( -124.69 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_4FOO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FOO-query.scw
PDB file :
Tito_Scwrl_4FOO.pdb
: