Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTEMKSFLKLFAQPLLVVLAFMLLYALAHAVLGFYVKKDSAPMSPNVEKSETERQNSTFSPKEEANATTTATEQNPTKDTVPPLDTATQKQEIKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTPTTPLMGK------KPLEYKVAVSGVNVRAFPSTKGKIIGSLIKNKSVKVLEIQNDWAEIEFSHETKGYVFLKLLKKAE |
| 3VSK Chain:A ((314-416)) | ---------------------------------------------------------------------------------------------------QDLKLTIDIDLQKEVEALLDKQIKKLRSQGAKDMDNAMMVVQNPKNGDILALAGKQINKSGKMTDYDIGTFTSQFAVGSSVKGGTLLAGYQNKAIKVGETMVDEPLHFQGGLTKRSYFNKNGHVSI |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VSK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 8481 for 462 contacts (18.4/contact) +
2D Compatibility (PS) -10007 + (NN) -1502 + (LL) 7644
1D Compatibility (HY) -2400 + (ID) 1200
Total energy: 1016.0 ( 2.20 by residue)
QMean score : 0.266
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