Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNLVILSGAGISAESGIKTFRDAGGLWEGHDIMEVASPYGWKKNPQKVLDFYNQRRRQLFEVYPNKAHKALAELEKHYQVN-IITQNVDDLHERAGSSRILHLHGELLSVRSEKDPNLVYRWEKDLNLGDLAQ-DKAQ--LRPDIVWFGEEVP--LLKEAVSLVKQVHLLIIIGTSLQVYPAASLYTHANKDALIYYIDPKAKNARLPQNVQCINENAVHAMQDLMPKLIEMASQEMLK |
1M2J Chain:A ((13-196)) | -KYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKANQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNN-SFEVESAPKIPPLPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVRKALSLKLN- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1M2J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -73865 for 1364 contacts (-54.2/contact) +
2D Compatibility (PS) -18847 + (NN) -4735 + (LL) 476
1D Compatibility (HY) -13200 + (ID) 4300
Total energy: -114471.0 ( -83.92 by residue)
QMean score : 0.492
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