Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRFDLRPLKAD-IFERLEELIEKEMQPNEVAIFMFEVGDFSNIPKSAEFIQSKGHELLNSLRFNQADWTIVVRKKA
1PAV Chain:A ((7-78))
-RVIDARGSYCPGPLMELIKAYK-QAKVGEVISVY--STDAGTKKDAPAWIQKSGQELVGVFD-RNGYYEIVMKKVK
General information:
TITO was launched using:
RESULT:
Template:
1PAV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28631 for 649 contacts (-44.1/contact) +
2D Compatibility (PS) -7757 + (NN) -1469 + (LL) 640
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -40717.0 ( -62.74 by residue)
QMean score : 0.398
(partial model without unconserved sides chains):
PDB file :
Tito_1PAV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PAV-query.scw
PDB file :
Tito_Scwrl_1PAV.pdb
: