Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLSSNDLFMVVLGAILLVLVCLVGYLYLKEKEFYHKMRRLEKTLDESYQENYLYSKRLRELEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKER-DYLEEKIITLENKFKDMGHYAASDEVNEKQVLKMYQEGYSVDSISKEFKVSKGEVEFILNMAGLKW |
2HMX Chain:A ((55-129)) | ------------------------------------------------------SEGCRQILGQLQ-PSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEE----QNKSKKKAQQAAADTGNNSQVSQNY------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2HMX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 18410 for 402 contacts (45.8/contact) +
2D Compatibility (PS) -7418 + (NN) 2463 + (LL) 8356
1D Compatibility (HY) -1200 + (ID) 1400
Total energy: 19211.0 ( 47.79 by residue)
QMean score : 0.190
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