Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPIKTYDIKEEELAKTAYATIKTNKGNITLELFYKDAPQAVSNFVTLAKEGFYNGLNFHRVIAGFVAQGGCPYGTGTGGPE---HRIKCEVAHNPNKHQRGSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSA-ESLSVLDKIKQGDIIESVVFSPSL
1XYH Chain:A ((3-134))
-------------------VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHI
General information:
TITO was launched using:
RESULT:
Template:
1XYH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61144 for 944 contacts (-64.8/contact) +
2D Compatibility (PS) -13657 + (NN) -6043 + (LL) 1720
1D Compatibility (HY) -9600 + (ID) 2650
Total energy: -91374.0 ( -96.79 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_1XYH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XYH-query.scw
PDB file :
Tito_Scwrl_1XYH.pdb
: