Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDELRAEKSFPSKPYDSLKNKSEFDRVYRKGFKKHNPFFSLFVLDLSKEPPKEKEGFKDPLSCRLKDRNTLCLLGLSVSKKVGNAVKRNLIKRRLRSLVTRHAALCQGFALVFVPRSDCYHLDFWALEKHFLEMLTSIKDYMNKALKDLKKGMTHTHAKQ
1A6F Chain:A ((5-101))
-------------KKRNRLKKNEDFQKVFKHGTSVANRQFVLYTLD---QPE-----------------NDELRVGLSVSKKIGNAVMRNRIKRLIRQAFLEEKERLKEKDYIIIARKPASQLTYEETKKSLQHLFRKSSLYK------------------
General information:
TITO was launched using:
RESULT:
Template:
1A6F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55527 for 647 contacts (-85.8/contact) +
2D Compatibility (PS) -10378 + (NN) -4298 + (LL) 3268
1D Compatibility (HY) -4000 + (ID) 1650
Total energy: -72585.0 ( -112.19 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_1A6F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A6F-query.scw
PDB file :
Tito_Scwrl_1A6F.pdb
: