Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKITAPRIPDGDLTVYPNDTYFIEDIGEVSEQIFRKTTLTGEIFEHFHLETIIFDGCVFDSVSLVSANLTDVVFKNCDLSNLDLMGAIIHRVRFENCKLIGMNFSDATLRNCVFVDCYADYVAFRYANLKWVAFEAGAYTNSDFSGAQLVDTYLERLDLNKAQFLNCALNGIDLSSCIFESITAMPQDLKGMSIDFSHAPALMPLFGIRVK
2XT4 Chain:A ((22-198))
----------------------------------------SGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQAGALSFERCILNDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDIKRARFSLPEAASLLNSLDIEL-
General information:
TITO was launched using:
RESULT:
Template:
2XT4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -181446 for 1406 contacts (-129.1/contact) +
2D Compatibility (PS) -18078 + (NN) 1256 + (LL) 2528
1D Compatibility (HY) -10000 + (ID) 1950
Total energy: -207690.0 ( -147.72 by residue)
QMean score : 0.271
(partial model without unconserved sides chains):
PDB file :
Tito_2XT4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XT4-query.scw
PDB file :
Tito_Scwrl_2XT4.pdb
: