Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKIVSPMGQFFEGEVEGFVINTKEGQQTVLEEHIDCLSFFDYSEISILDAVASDPIFVALGYLHLVQNEANIMAQFASADAEQAERIFERLNKRKQTESRRSNDK
2GZP Chain:A ((51-91))
----------------------------------------------------VSDNPVMIA----ELLREFPQFDWQVAVADLEQSEAIGDRFNVRR----------
General information:
TITO was launched using:
RESULT:
Template:
2GZP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4992 for 163 contacts (-30.6/contact) +
2D Compatibility (PS) -4504 + (NN) -3059 + (LL) 4640
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -11865.0 ( -72.79 by residue)
QMean score : 0.174
(partial model without unconserved sides chains):
PDB file :
Tito_2GZP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GZP-query.scw
PDB file :
Tito_Scwrl_2GZP.pdb
: