Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLMKFQLFIQPKLDVLQGNIVEYEILLRDDSAVPRFPLSELEAVLADEELYLAFSEWFSEAFLDVLKKYP--NDRFAINIAPQQLFY-IETLHWL-DKLKSESHR---ITVEMTEDIFDVPGHKRHLNANDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLVNKPFPV
3GFY Chain:A ((178-394))
------QFALQAIVEPAKKRVSSFEALIR--SPTGGSPV-EMFAAIAAEDRYRFDLESKAYAFA-LAGQLPLGKHQLAINLLPGSLYHHPDAVGWLMDSLLAAGLRPDQVLIE------------------DQFRKVLKALRVA---GMKLAID-----------LTRFQPDKIKVDAELVRDIHISGTKQAI-VASVVRCCEDLGITVVAEGVETLEEWCWLQSVGIRLFQGFLFSRP---
General information:
TITO was launched using:
RESULT:
Template:
3GFY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119914 for 1410 contacts (-85.0/contact) +
2D Compatibility (PS) -20090 + (NN) -8779 + (LL) 1984
1D Compatibility (HY) -10800 + (ID) 2600
Total energy: -160199.0 ( -113.62 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_3GFY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFY-query.scw
PDB file :
Tito_Scwrl_3GFY.pdb
: