Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEIKVKEATLAKYATKLESKGKSTEYLP----MKGGNMS-YSQANSINHFRTALFDLVDAVDNFQGVVGTDAKRLKELGASFTRKDQELERSMGLGGK
2VS0 Chain:A ((3-85))
--MIKMSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQE--------------
General information:
TITO was launched using:
RESULT:
Template:
2VS0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -515 for 435 contacts (-1.2/contact) +
2D Compatibility (PS) -7815 + (NN) -648 + (LL) 676
1D Compatibility (HY) -3600 + (ID) 400
Total energy: -12302.0 ( -28.28 by residue)
QMean score : 0.173
(partial model without unconserved sides chains):
PDB file :
Tito_2VS0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VS0-query.scw
PDB file :
Tito_Scwrl_2VS0.pdb
: