Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKYIDIANIGFKYESE--PVLENISFQVSAGEFIILTGENGAAKSTLLRIILGILQPDKGSVTFAKKNADGGRLLTG----YVPQQIASF-----NAGFPSTVLELVRSGRFPNGKWFKRLTTKDH--AHVEKALKSVEMWDYRHKRIGELSGGQKQRICLARMFATDPDILILDEPQTAMDKQSKIRFYNLLKHEAQVHGKAILMVTHDSEEMEDFVDKHIRLIRKEDVSWKCFSMDLCKEPSKRP
4HUQ Chain:B ((6-203))
---ISVDHLTYQYDENQAPALTDVSFTVHAGEWLAIVGHNGSGKSTLAKSLDGLLPFTQGSVTV------GGITLTPETVWQVREQIGMIFQNPDNQFVGATVEDDVAFG------LENRQISRDEMVPRVQAALAQVGMTSFAQREPSSLSGGQKQRVALAGIVAIAPKILILDEATSMLDPQGRIEMLAIVRQLRQQQNLTVISITHDIDE----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4HUQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104079 for 1365 contacts (-76.2/contact) +
2D Compatibility (PS) -20103 + (NN) -10686 + (LL) 2928
1D Compatibility (HY) -13200 + (ID) 3400
Total energy: -148540.0 ( -108.82 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_4HUQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HUQ-query.scw
PDB file :
Tito_Scwrl_4HUQ.pdb
: