Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYKIIAIDIDGTLLN-DTHEITPAVRDSIKAAKAKGVKVVLCTGRPLAGIKKSLIELDLLDEGDYAITFNGAVVLETASEKTLADITLNKTELEEIYAFCHAENVNVTYFDGKNMYVPSRKITEITCQDSLLLGTPLY---HLPV------EEAPESIHVSKVMLLDSPEKITDVIKKLPENIKEKFYVVRSVPYNLEFLQKGVNKGSALASLADKLGVDQSEVMSIGDQENDITMIEYAGMGVAMGNATEHIKEIANYTTTTNNEDGVAQAIQMLILDR |
1YMQ Chain:A ((2-258)) | -TKALFFDIDGTLVSFETHRIPSSTIEALEAAHAKGLKIFIATGRPKA-IINNLSELQDRNLIDGYITMNGAYCF--VGEEVIYKSAIPQEEVKAMAAFCEKKGVPCIFVEEHNISV---------CQPNEMVKKIFYDFLHVNVIPTVSFEEASNK-EVIQMTPFITEEEEKEVLPSIPTCEIGRWY-----PAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKAAADYVTAPIDEDGISKAMKHF---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YMQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -125547 for 2190 contacts (-57.3/contact) +
2D Compatibility (PS) -26840 + (NN) -6070 + (LL) 2060
1D Compatibility (HY) -15600 + (ID) 4100
Total energy: -176097.0 ( -80.41 by residue)
QMean score : 0.546
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