Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATTMRLDKYLKVSRLIKRRTVAKEVAEKGRIAVNGVTAKPGTNVKSGDELVIRFGPKIVTAKIERLEENAKKEQATEMYTIIKEERTDESR
1DM9 Chain:B ((6-60))
-AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1DM9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12919 for 348 contacts (-37.1/contact) +
2D Compatibility (PS) -6080 + (NN) -2259 + (LL) 3580
1D Compatibility (HY) -3600 + (ID) 1050
Total energy: -22328.0 ( -64.16 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_1DM9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DM9-query.scw
PDB file :
Tito_Scwrl_1DM9.pdb
: