Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYQDALKQIDANKVYTAEEAVELAKKIDFAKFDATVEVAFRLGVDPKKADQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGESEFVEKINQGWFDFDVIVATPDMMGEVG-KLGRVLGPKGLMPNPKTGTVTMDVTKAVNEIKAGKVEYRVDKAGNVHAAIGKVSFDAAKLVENFRTVNDVLQKAKPAAAKGTYVKNLSVTTTFGPGIKVDPASL
4REO Chain:A ((9-229))
--------RALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTVMGPSVRINPHS-
General information:
TITO was launched using:
RESULT:
Template:
4REO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106374 for 1786 contacts (-59.6/contact) +
2D Compatibility (PS) -24281 + (NN) -16289 + (LL) 704
1D Compatibility (HY) -18400 + (ID) 5900
Total energy: -170540.0 ( -95.49 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_4REO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4REO-query.scw
PDB file :
Tito_Scwrl_4REO.pdb
: