Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIKSISKSELEVMKIIWDFGRAVQYADVAGKLEE-KNYSWKKNTVLTFLTRLVEKNLLSVKKVGRKNEYY--ALVSENEYLERQTETFVEEIYEGDVKGLITNLVQNDLISPDELEDLQQFWKRMKSPNE
1XSD Chain:A ((8-119))
-----ISMAEWDVMNIIWD-KKSVSANEIVVEIQKYKEVSDK--TIRTLITRLYKKEI--IKRYKSENIYFYSSNIKEDDIKMKTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDI---------
General information:
TITO was launched using:
RESULT:
Template:
1XSD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59488 for 649 contacts (-91.7/contact) +
2D Compatibility (PS) -11502 + (NN) -739 + (LL) 1304
1D Compatibility (HY) -11200 + (ID) 1750
Total energy: -83375.0 ( -128.47 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_1XSD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XSD-query.scw
PDB file :
Tito_Scwrl_1XSD.pdb
: