Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNLFLTSSFKDVVPLFTEFESNL-QGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGAVITSPNIAYIQTMDSTKKAVNLTNYDALNLVDFSTLPHYNNTPFKEITQKIVTEYAGKSQIYPISNHEAIFIRGKEVITKRLS
3L4E Chain:A ((2-206))
MKNLFLTSSFKDVVPLFTEFES-NLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGAVITSPNIAYIQTMDSTKKAVNLTNYDALNLVDFSTLPHYNNTPFKEITQKIVTEY----QIYPISNHEAIFIRGKEVITKRLS
General information:
TITO was launched using:
RESULT:
Template:
3L4E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131411 for 1728 contacts (-76.0/contact) +
2D Compatibility (PS) -21441 + (NN) -5513 + (LL) -72
1D Compatibility (HY) -28800 + (ID) 9950
Total energy: -197187.0 ( -114.11 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_3L4E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L4E-query.scw
PDB file :
Tito_Scwrl_3L4E.pdb
: