Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLIIVMLTIFTAVLVVGCSGTGTADKAETKKETTKESKQANAVKKEVKEMKSNLDDVKKAISDKDKSALQSSA-AELHKHWL------EFENNVRDLYPLQYTDVEKYETPIFYESKNDNPNFDTLNDNATGLDGALDTLEKAKETKAKTSEVLDKAVDNYSKYVTEQVDEFVAQTEIFTNAVKSGDIEKAKAAYVSPRLNYERIEPIAESFGDLDPKIDARINDVENEADWTGFHVIERALWEKKSLEGMDVYADKLLTDAKALQAEVKNLKLEPKPMVAGAMELLNEAATTKITGEEEAYSHTDLDDLNANVEGSKVVYQAIIPALNAQDKKLADQIDAAFNKMEDTLANYKNGDSFVLYTTLTKDQIRDISDQLSHLSELMAQTGKIF |
| 3JAM Chain:B ((145-233)) | ---------------------------------------KQANQVKRTSYAQSSHIRQIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLL-------KQPKFDL--GSLLSLHG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3JAM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 5000 for 382 contacts (13.1/contact) +
2D Compatibility (PS) -8407 + (NN) -3813 + (LL) 22868
1D Compatibility (HY) -4800 + (ID) 1350
Total energy: 9498.0 ( 24.86 by residue)
QMean score : 0.432
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