Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKTWEEFLKQEAKQPYFIELMEAVKDARAKG-NVYPSEEDMFSCFRLCPYNQVKVVILGQDPYHGPGQAHGLSFSVQKDVRIPPSLRNIYKELKTDL-DIEPADHGYLAKWAEQGVLLMNTSWSVEEGKAGSHKKLGWATFTDHVLEELNNYDKPLVFILWGNHAIKAASGITNPQHLIIKGVHPSPLAASRGFFGSKPFSKTNAFLEEHERKPIDWDLNEQ
3EUG Chain:A ((6-220))
---TWHDVLAEEKQQPHFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQHGETPIDW-----
General information:
TITO was launched using:
RESULT:
Template:
3EUG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117593 for 1732 contacts (-67.9/contact) +
2D Compatibility (PS) -23151 + (NN) -13576 + (LL) 708
1D Compatibility (HY) -22000 + (ID) 5350
Total energy: -180962.0 ( -104.48 by residue)
QMean score : 0.704
(partial model without unconserved sides chains):
PDB file :
Tito_3EUG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EUG-query.scw
PDB file :
Tito_Scwrl_3EUG.pdb
: