Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKVRNKVKQLREERGIGQNELALALEVSRQTIHAIEKGKYNPSLELSLKMARYFRLTIEEIFQLEEN
2LYJ Chain:A ((2-64))
--IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQ--
General information:
TITO was launched using:
RESULT:
Template:
2LYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26218 for 456 contacts (-57.5/contact) +
2D Compatibility (PS) -6842 + (NN) -1599 + (LL) 264
1D Compatibility (HY) -7200 + (ID) 1750
Total energy: -43345.0 ( -95.05 by residue)
QMean score : 0.642
(partial model without unconserved sides chains):
PDB file :
Tito_2LYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LYJ-query.scw
PDB file :
Tito_Scwrl_2LYJ.pdb
: