Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRYLDEQAIENIAIGAAFLGTGGGGDPYIGKMMALTAIKKHGPIKLLSPEEIADDDYFIPAAMMGAPSVLIEKFPKGDEFVRVFEKLGRYVGKEVKGTFPMEAGGVNSMIPIVVAAQLGLPMVDCDGMGRA---FPELQMVTFHLDGISATPMAITDEKGNIGIMETIDNKWTERLARVTTVEMGASSLVSLYPCNGAQIKQS----SIKNIVTLSEEIGKVIRETSMDEAEKLQKLLDVTHGYHLFEGKITDVVRETRAGFNFGRVKIDGLNKDTNSEVIVHFQNENLVAEKNGEPIAITPDLICMVDLETLMPVTTEALKYGKRVRVMALPADDAWRTDKGIETVGPRYFGYDVDFEPLEELVKKEERRHV |
| 3JAM Chain:E ((61-239)) | -----------------------------------------------------------------------------------------------------------------VKAILMQRHVKVDGKVRTDTTFPAGFMDVITLEATNENFRLVYDVKGRFAVHRITDEEASYKLAKVKKVQLGKKGIPYVVTHDGRTIRYPDPNIKVNDTVKVDLATGTITDFIKFDTG----KLVYVTGGRNL--GRVGTIVHRERHEGGFDLVHI----KDSLENTFVTRLNNVFVIGEPGRPWISLP----------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3JAM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -22711 for 1212 contacts (-18.7/contact) +
2D Compatibility (PS) -18126 + (NN) -2050 + (LL) 12704
1D Compatibility (HY) -7600 + (ID) 2250
Total energy: -40033.0 ( -33.03 by residue)
QMean score : 0.177
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