Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LLTKRIIPCLDVTAGRVVKGVNFVSLTDVGDPVEIAKAYNEAGADELVFLDITATVELRQTMIDVVERTAEQVFIPLTVGGGISSVSDMKELLQAGADKISLNSAAIKRPELIQEGAAKFGNQCIVVAIDAKWNGTNWSVFTRGGRNDTGLDAIEWAKKAVQLGAGEILLTSMDGDGTKNGYDIPLTKAISEAVSVPVIASGGCGNAAHMVEVFEKTKATAALAASIFHYGELSIKNVKTTLLEKGVNIRP
1THF Chain:D ((1-249))
MLAKRIIACLDVKDGRVVKGSNFENLRDSGDPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEA-FLAGADAALAASVFHFREIDVRELKEYLKKHGVNVR-
General information:
TITO was launched using:
RESULT:
Template:
1THF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145629 for 2169 contacts (-67.1/contact) +
2D Compatibility (PS) -27479 + (NN) -11282 + (LL) -8
1D Compatibility (HY) -21200 + (ID) 6450
Total energy: -212048.0 ( -97.76 by residue)
QMean score : 0.667
(partial model without unconserved sides chains):
PDB file :
Tito_1THF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1THF-query.scw
PDB file :
Tito_Scwrl_1THF.pdb
: