Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQIFPAIDLKNGQCVRLFQGDFSKKTVVNEDPIAQAKAFATDGATYLHIVDLDGAL---EGRPINLEVIQKMKITAKIPVQVGGGIRSMAQVDYYLESGIDRVIIGSAALTDPDFLRAAVQKYGAKIAAGIDAKNGFVATRGWLDVSQVSYLDLAKRMEKVGVETIIYTDISRDGTLTGPNLEQMANLKEHVKVNLIASGGVSSRADLEALAQL---GLYGAIAGKALYNHHISMSDIVEVEQIAY
2X30 Chain:A ((4-237))
LELLPAVDVRDGQAVRLVHGESGTETSYGS-PLEAALAWQRSGAEWLHLVDLDAAFGTGDNRALIAEVAQAMDI----KVELSGGIRDDDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGNGWTRDGGDLYETL-DRLNKEGCARYVVTDIA-------PNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEALE------
General information:
TITO was launched using:
RESULT:
Template:
2X30.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148668 for 1860 contacts (-79.9/contact) +
2D Compatibility (PS) -24026 + (NN) -9131 + (LL) 1348
1D Compatibility (HY) -16400 + (ID) 4250
Total energy: -201127.0 ( -108.13 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_2X30.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2X30-query.scw
PDB file :
Tito_Scwrl_2X30.pdb
: