Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNVLFIKANGLPAERSVSVALYEIFLTEYKKSHPDDNVTELDLF--EADLPYYDVTMMSG---LHKEAAGETLSPEEKRLADIANSYLDQFLAADKIVMAFPLWNFSIPAQFLTYLFYLNQAGKTFKYTANGPVGLVADKKIALLNARGGIYSDGPMQSFEMSLNYVKNVLAHFGISEPEMVIVEGHNAKPDQAKDIISAGAKEAVELAKIF
2HPV Chain:A ((2-208))
-SKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFY-----EGKDFASQYIKAILNFIGVDQVDGLFIEGIDHFPDRAEELLNTAMTKATEYGKTF
General information:
TITO was launched using:
RESULT:
Template:
2HPV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118474 for 1550 contacts (-76.4/contact) +
2D Compatibility (PS) -21685 + (NN) -9925 + (LL) 0
1D Compatibility (HY) -13200 + (ID) 3550
Total energy: -166834.0 ( -107.63 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_2HPV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HPV-query.scw
PDB file :
Tito_Scwrl_2HPV.pdb
: