Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFNWYKKYREEKRDYKQYKKRIAALPEDYKTAMKAIETYLWNFAKGAGMFEILKNVLEMFENA----AADNLELKAVVGDDLAEFADNLLSEFPEETWMDKQRQKLRDSIK
4DLO Chain:A ((127-177))
--------------------------------------------------EILRNVTDTFKRASYIPASDGVQ-------NFFQIVSNLLDEENKEKWEDAQQ--------
General information:
TITO was launched using:
RESULT:
Template:
4DLO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4884 for 168 contacts (-29.1/contact) +
2D Compatibility (PS) -4648 + (NN) -4643 + (LL) 5372
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -12053.0 ( -71.74 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_4DLO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DLO-query.scw
PDB file :
Tito_Scwrl_4DLO.pdb
: