Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVGIIIGTHGEAARELLKSTEMIIGKQDNVEFITFVPGENTDTLITKYKEKL--DKLDTSEGVIFMVDLFGGSPYNASSQIALPEDNMDVVTGVNIPMLLETLSMRAASNQKDLVETALTAGSGGVKSLKQSLPKIETEVGEDDL
3LFH Chain:A ((6-129))
----VLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIE-VVRKEVEKIIKEKLQEDKEIIIVVDLFGGSPFNIALSM-MKEYDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVI----------------
General information:
TITO was launched using:
RESULT:
Template:
3LFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62347 for 854 contacts (-73.0/contact) +
2D Compatibility (PS) -13725 + (NN) -7066 + (LL) 1152
1D Compatibility (HY) -13200 + (ID) 2300
Total energy: -97486.0 ( -114.15 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_3LFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LFH-query.scw
PDB file :
Tito_Scwrl_3LFH.pdb
: