Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLFIKASPLPNEVSRSSQVAETFMAEYKAKNPSDTVEELVLYNTEVPLLDLELMTAGRELQAGKAFTDLAPDVQKKLNAYNALTEQFLAADKYVFVFPLWNLGIPPLLKAYIDTFVIAGKSFRYTEHGPEALLKDKKAILIHGSGGIYSAGPTSSFTHGEPYLRTILQFIGINVVPSIFVEGIDHNPSKEAEIVAAAKAVAQESATEF
3P0R Chain:A ((5-211))
-TKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMING--TFKAGKGF-DLTEEEAKAVAVADKYLNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMAVKYVASMMGFFGATNMETVVIEGHNQFPDKAEEIITAGLEEAAKVANKF
General information:
TITO was launched using:
RESULT:
Template:
3P0R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105131 for 1639 contacts (-64.1/contact) +
2D Compatibility (PS) -23328 + (NN) -15677 + (LL) 188
1D Compatibility (HY) -18800 + (ID) 4150
Total energy: -166898.0 ( -101.83 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_3P0R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P0R-query.scw
PDB file :
Tito_Scwrl_3P0R.pdb
: