Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDNNQKDLNQVIRQLKEKGIVVEKTKSRKDIWKSVSSKAMPNMTLRLQ
2PQC Chain:A ((350-377))
----SDRLSAVANGLKLNGVDCDEGETSLVVR----------------
General information:
TITO was launched using:
RESULT:
Template:
2PQC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3064 for 131 contacts (23.4/contact) +
2D Compatibility (PS) -3186 + (NN) -2611 + (LL) 1140
1D Compatibility (HY) -1200 + (ID) 250
Total energy: -3043.0 ( -23.23 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_2PQC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PQC-query.scw
PDB file :
Tito_Scwrl_2PQC.pdb
: