Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLIINENEQLVAETVSRRIIELVKE-KPAS----LICIAGGDTPLLTIEALIKANQAGEVDFSNTQFVGLDEWVGLGRETKGSCIQTLYDAFFDRLKNVSSEQICFFDGKATSLTDECARVDKFIDDRGGMDFILLGIGLNGHIGFNEPFVPVDVNCHVVELDDVTKRVMSKYFDTDLPLT--HGISLGMQQILAAKEIFLVATGEKKIDIVKQVVEKEPTVAIPATLVKDSNTMLVVDKIAASGVEA
1CD5 Chain:A ((1-217))
MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHV-DIPAENINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVE-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1CD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151412 for 1619 contacts (-93.5/contact) +
2D Compatibility (PS) -22686 + (NN) -9947 + (LL) 2528
1D Compatibility (HY) -14000 + (ID) 2950
Total energy: -198467.0 ( -122.59 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_1CD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CD5-query.scw
PDB file :
Tito_Scwrl_1CD5.pdb
: