Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LMVKRGDVYYADLSPVVGSEQGGIRPVLIIQNDIGNRFSPTVIVAAITAKIQKAKLPTHVEATRKD-GFEKDSVILLEQIRTIDKQRLTDKITHLDEDLMAKVNKALEVSLGVVEF
4MZP Chain:A ((15-125))
--IRRGDVYLADLSPVQGSEQGGVRPVVIIQNDTGNKYSPTVIVAAITGRINKAKIPTHVEIEKKKYKLDKDSVILLEQIRTLDKKRLKEKLTYLSDDKMKEVDNALMISLGL---
General information:
TITO was launched using:
RESULT:
Template:
4MZP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67034 for 774 contacts (-86.6/contact) +
2D Compatibility (PS) -12101 + (NN) -5553 + (LL) 812
1D Compatibility (HY) -12800 + (ID) 3700
Total energy: -100376.0 ( -129.68 by residue)
QMean score : 0.613
(partial model without unconserved sides chains):
PDB file :
Tito_4MZP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MZP-query.scw
PDB file :
Tito_Scwrl_4MZP.pdb
: