Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTFWQDMMNFFSYDNLMYWLSEYRNLGPLLAFLLPFIEAFLPFLPFIVFVVVNVNAYGLLIGFLISVIAAIAGSLCVFLLARKFGQTRFLRFISGHKQIKRVMEWIDRHGFSPIFILLVMPFTPSSAVNIVAGLSKIKVYQFILALVGGKLIKVFAISYIGYDFVDLIHQPLKLAILAVSVVILWFVGKRLEHWMSGKNLK |
1U5L Chain:A ((119-139)) | --------------------------------------------------------------------GSVVGGLGGYALGSAMSGMRM---------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U5L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2151 for 64 contacts (-33.6/contact) +
2D Compatibility (PS) -1911 + (NN) 2583 + (LL) 16516
1D Compatibility (HY) -1200 + (ID) 200
Total energy: 13637.0 ( 213.08 by residue)
QMean score : -0.012
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