Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MINQKKIAGEKAC-EWIKDGMVVGLGTGSTVYYTIEKLGEMVNNGL--HITGVATSEETNKQAQNLGIPLKSLNDVTEIDITIDGADEIDTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRN-LGKF-PLPLEVIPFGWKQVERKLEKEH----IQTNLRKQSSGEVYVTNNGNYILD-IVNQTFTDAEMWQEKLAQIPGIVEHGLFLHYVDIIICAKANGEIELIKK
2F8M Chain:A ((9-241))
MDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGDESKLCTNGLGMTGAVPIEILTFGYEKIIENLLKIYTLKGCTYKIRKR-NGEIFITDNKNYIVDFFFTEPIQDLLETCTRIKMTTGVVDHGIFVNMTNVALISKHDGTVLTLNK
General information:
TITO was launched using:
RESULT:
Template:
2F8M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101618 for 1849 contacts (-55.0/contact) +
2D Compatibility (PS) -24635 + (NN) -9242 + (LL) -28
1D Compatibility (HY) -22000 + (ID) 4250
Total energy: -161773.0 ( -87.49 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_2F8M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F8M-query.scw
PDB file :
Tito_Scwrl_2F8M.pdb
: