Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKIVFFDVDGTLVG-ETKEIPASAKQAIAKLKENGVYVAIATGRGPFMLDEIRKELD---INSYICYNGQYVIFEGKEIYAKPLPTESLERLITVASEHEHPIVFSGKDSMRANLPDHDRVTIGMNSIKREY-PKVDANYYKGRDIYQCLLFCDESYDAYYREEFKQYGFLRWHDVSVDVCPADGSKAEGIKQMIKKLGFSMKDTYAFGDGLNDIAMLQTVGTGVAMGNGRDEVKAVADYVTSHVDDDGVYNALKQLKLI |
| 2RAR Chain:A ((1-261)) | MTKALFFDIAGTLVSFETHRIPSSTIEALEAAHAKGLKIFIATGRPKAIINNLSELQDRNLIDGYITMNGAYCFVGEEVIYKSAIPQEEVKAMAAFCEKKGVPCIFVEEHNISVCQPNEMVKKIFYDFLHVNVIPTVSFEEASNKEVIQMTPFITEEEEKEVLPSIPTCEIGRWYPAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKAAADYVTAPIDEDGISKAMKHFGII |
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General information:
TITO was launched using:
| RESULT:
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Template: 2RAR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -133715 for 2287 contacts (-58.5/contact) +
2D Compatibility (PS) -27779 + (NN) -13300 + (LL) 0
1D Compatibility (HY) -19200 + (ID) 3950
Total energy: -197944.0 ( -86.55 by residue)
QMean score : 0.557
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