Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQKTFIKVTCSILTISD--TRNLDTDTSGQLIQSALETA---GHEVISRVVVPDDVTLIKQKINELA-ANGSFCLITNGGTGIARRDVTYEALFATIQQEIPGFGEIFRMLSYEEVGSRAMVSRAFAGFSESGLLLFALPGSSNACQLAVQKLIIPELPHLIAERQK
2PBQ Chain:A ((5-156))
-------KAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEVEYRVI-PDERDLIEKTLIELADEKGCSLILTTGGTGPAPRDVTPEATEAVCEKMLPGFGELMRQVSLKQVPT-AILSRQTAGIRGS-CLIVNLPGKPQSIKVCLDA-VMPAIPYCI-----
General information:
TITO was launched using:
RESULT:
Template:
2PBQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100895 for 1189 contacts (-84.9/contact) +
2D Compatibility (PS) -15502 + (NN) -5131 + (LL) 1712
1D Compatibility (HY) -12400 + (ID) 2800
Total energy: -135016.0 ( -113.55 by residue)
QMean score : 0.616
(partial model without unconserved sides chains):
PDB file :
Tito_2PBQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PBQ-query.scw
PDB file :
Tito_Scwrl_2PBQ.pdb
: