Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEYSYPLNPDWTTEEMTIVVQFLEAIERAYEKGIDTLELKEK----YRAFKQVVPAKGEEKRIGIDFEKASGYSAYKVMQLVKNATTSKIKMQP
3BAM Chain:A ((77-125))
------------------------------EKPLDILKLEKKKGGPIDVYKEFI-ENSELKRVGMEFETGNISSAHRSMN--------------
General information:
TITO was launched using:
RESULT:
Template:
3BAM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4656 for 197 contacts (23.6/contact) +
2D Compatibility (PS) -4429 + (NN) 2483 + (LL) 3796
1D Compatibility (HY) -3200 + (ID) 800
Total energy: 2506.0 ( 12.72 by residue)
QMean score : 0.223
(partial model without unconserved sides chains):
PDB file :
Tito_3BAM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BAM-query.scw
PDB file :
Tito_Scwrl_3BAM.pdb
: