Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIVESKLAGVKLVKPKVFGDHRGFFMESYNEKAFHEA-GIDMKFIQDNHSLSVEAGVLRGMHYQTNPKAQTKLIRVATGAIYDVVVDMRKGSPTYGEWEGYILSEANKHQLLVPQGFAHGFCTITENVNVLYKVDQLYSPENDAGIAYDDPDLNITWP-TDKLILSDKDTKHPRLKDAENNFVWENK
1RTV Chain:A ((4-181))
MKATRLAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSAR-GVLRGLHYQIR-QAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDAPLLSEKDRQGKAFADAD--------
General information:
TITO was launched using:
RESULT:
Template:
1RTV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68768 for 1348 contacts (-51.0/contact) +
2D Compatibility (PS) -19181 + (NN) -6904 + (LL) 412
1D Compatibility (HY) -14800 + (ID) 4300
Total energy: -113541.0 ( -84.23 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_1RTV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RTV-query.scw
PDB file :
Tito_Scwrl_1RTV.pdb
: